rs36854520 SNP Detail

Summary

• ID
  rs36854520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6095823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTGTGACC CCTGTGTAAC GGTTTGATTC CCAAAGGGCT
  TACGACTCAC AGGTTGAGAG CCAGCCACTG CCTTAAAGTC GTCTAGAATC AGTTTTCTTT
  Y
  TTTTTTGACA GACAAGATGT TTAATTCCGT TGTACTGAAG GAAAGCCATT TTATGTATTT
  TTCTTAAGTG CTCTATCAGT AATGACAATT CTGAAAGCCC                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50575710	NES13653294	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	C	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36854520					SNP	T	T	T	C	T	C	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50575710	NES13653294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6095823 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10491	CpG island 10491	421 bp proximal
D530017H19Rik	RIKEN cDNA D530017H19 gene	within coordinates
Gm8034	predicted gene 8034	971 bp upstream
Gm59262	predicted gene, 59262	309 bp upstream
Rr370438	regulatory region 370438	515 bp upstream
Rr405816	regulatory region 405816	1312 bp downstream
Rr405817	regulatory region 405817	within coordinates
Rr543275	regulatory region 543275	1353 bp distal
Rr543276	regulatory region 543276	1489 bp distal
Rr543277	regulatory region 543277	within coordinates
Rr543278	regulatory region 543278	266 bp proximal
Rr543279	regulatory region 543279	880 bp proximal
Rr543280	regulatory region 543280	1219 bp proximal
Rr543281	regulatory region 543281	1322 bp proximal
Rr543282	regulatory region 543282	1515 bp proximal
Rr543283	regulatory region 543283	1578 bp proximal
Rr543284	regulatory region 543284	1626 bp proximal
Syvn1	synovial apoptosis inhibitor 1, synoviolin	783 bp upstream
Tssr154538	transcription start site region 154538	311 bp upstream
Tssr154539	transcription start site region 154539	836 bp upstream
Tssr154540	transcription start site region 154540	1228 bp upstream
Tssr154541	transcription start site region 154541	1262 bp upstream
Tssr154542	transcription start site region 154542	1288 bp upstream
Tssr157816	transcription start site region 157816	892 bp upstream
Tssr157817	transcription start site region 157817	1155 bp downstream
Tssr157818	transcription start site region 157818	1617 bp downstream