rs3684277 SNP Detail

Summary

• ID
  rs3684277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:23246690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA GAATAGAGAA CTTAATTTAC
  R
  GTACTTGGTT ATTGTGATGC GGAAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5060329	WI_WGS_6_23207025	WI	MOUSE	f	SNP	G	A
ss321767791	CHEV_6_23196691	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3684277					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:23246690 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17196	CpG island 17196	723 bp distal
Cpgi17197	CpG island 17197	615 bp proximal
Fezf1	Fez family zinc finger 1	Intron
Gm56925	predicted gene, 56925	1820 bp upstream
Rr627164	regulatory region 627164	1661 bp proximal
Tssr55159	transcription start site region 55159	1847 bp upstream
Tssr55160	transcription start site region 55160	1928 bp upstream
Tssr59962	transcription start site region 59962	1680 bp downstream