rs3683432 SNP Detail

Summary

• ID
  rs3683432
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110156728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAC TCAAGACTTG AGAGAATTCC
  R
  GCTGAAAGAA ACAGCTTTAA AAATC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss5059477	WI_WGS_3_110750126	WI	MOUSE	f	SNP				G			A
ss46886717	NES10698468	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	A	G		G	G	A		G		A
ss135590559	ENSMUSSNP2827960	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss320872059	CHEV_3_110052330	CHEVERUD	SCREENING_POP	f	SNP											G		G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs3683432					SNP	G	G	G	G	A	G	A	G	G	A	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886717	NES10698468	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110156728 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C130013H08Rik	RIKEN cDNA C130013H08 gene			603 bp upstream
Cpgi13720	CpG island 13720			337 bp proximal
Prmt6	protein arginine N-methyltransferase 6			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr397950	regulatory region 397950			1463 bp upstream
Rr583471	regulatory region 583471			113 bp proximal
Rr583472	regulatory region 583472			1193 bp proximal
Rr583473	regulatory region 583473			1571 bp proximal
Rr583474	regulatory region 583474			1686 bp proximal
Tssr31306	transcription start site region 31306			731 bp upstream
Tssr31307	transcription start site region 31307			771 bp upstream
Tssr35241	transcription start site region 35241			1551 bp downstream
Tssr35242	transcription start site region 35242			1956 bp downstream