rs3683384 SNP Detail

Summary

• ID
  rs3683384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:110156708 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAT AAGGAAGCAC AGGTAGGCAC
  Y
  CAAGACTTGA GAGAATTCCA GCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
ss5059429	WI_WGS_3_110750106	WI	MOUSE	f	SNP				C		T
ss45411127	mCV23474878	ABI	CRAMUS_MOUSE	f	SNP		C	C			T	C
ss46886714	NES10698467	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T		C	C		C		T
ss135590556	ENSMUSSNP1423681	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C				C
ss320872058	CHEV_3_110052310	CHEVERUD	SCREENING_POP	f	SNP									C		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	SM/J	WSB/EiJ
rs3683384					SNP	C	C	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46886714	NES10698467	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:110156708 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
C130013H08Rik	RIKEN cDNA C130013H08 gene			623 bp upstream
Cpgi13720	CpG island 13720			357 bp proximal
Prmt6	protein arginine N-methyltransferase 6			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Rr397950	regulatory region 397950			1483 bp upstream
Rr583471	regulatory region 583471			133 bp proximal
Rr583472	regulatory region 583472			1213 bp proximal
Rr583473	regulatory region 583473			1591 bp proximal
Rr583474	regulatory region 583474			1706 bp proximal
Tssr31306	transcription start site region 31306			751 bp upstream
Tssr31307	transcription start site region 31307			791 bp upstream
Tssr35241	transcription start site region 35241			1571 bp downstream
Tssr35242	transcription start site region 35242			1976 bp downstream