rs36810903 SNP Detail

Summary

• ID
  rs36810903
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:85302743 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                      T GGCCATATAA TGCATTATGC TTATTGACTA GTATTTTGTC
  TTGAATCAAA GATATAATCA GGGGACTACC GAGACAAAGG GCGTTACTTG CTTTATAGAC
  R
  CTGCCAAATG GCTGCTGAGG AGGCAAAGTC TATGCATTTC CATGCCAGTA GCTACTGAGG
  TGAGGCGTCT TCCTCTCTCA GCCCAAGTAC ACAAAGGCAA T                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss50544141	NES14081896	PERLEGEN	MM_PANEL2	f	SNP		G	A	G		G	G	G	A	G
ss145027779	ENSMUSSNP6791577	ENSEMBL	ENSEMBL_Sanger	f	SNP	A				A
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36810903					SNP	A	G	A	G	A	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50544141	NES14081896	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:85302743 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm2619	predicted gene 2619			Intron
				Noncoding-Transcript-Variant
Gm16025	predicted gene 16025			1707 bp upstream
Rr414356	regulatory region 414356			1642 bp distal
Tssr137	transcription start site region 137			1686 bp upstream