rs36800863 SNP Detail

Summary

• ID
  rs36800863
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162693296 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATGACTC ACTTACACGT
  TCACTAGGAA GGCATCTTTA TTCACGCAGG CAGGTACCCC CACATTCTTC TTTAGTGTGT
  GCCAATATCT CAGAATACTG ACAGGCACAG ACTGCCCTAT CAGAGCATAT CCCTAAATGG
  GTTGTGTCAG TTCAAGCGTT AGCACTTGTA GTATATTCAG ATGGATAATT GGGACCTGGG
  M
  TGGAATAAGA GTATGTTCTG AGATTTGTAA CCTCTTAACA GCAGACATTT ACTTCCTCAA
  GCCTAATCCT AAACCATCTA CCACATAACA CATGCTGCCT CTTACAAGGT TATAACAAGT
  TCCCTAAGAG AGTAAAGACT CTAAGAAAAC AACTGGGCAT TGAGACCCAT GTTTTCTATG
  CTTACATAAA ATATATGGAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51396480	NES14462601	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36800863					SNP	C	C	C	C	C	C	C	C	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51396480	NES14462601	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162693296 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	1172 bp distal
Rr422027	regulatory region 422027	348 bp distal
Rr422028	regulatory region 422028	729 bp proximal
Rr422029	regulatory region 422029	873 bp proximal
Tssr14673	transcription start site region 14673	632 bp downstream
Tssr14674	transcription start site region 14674	698 bp downstream
Tssr14675	transcription start site region 14675	713 bp downstream
Tssr14676	transcription start site region 14676	736 bp downstream
Tssr14677	transcription start site region 14677	756 bp downstream
Tssr14678	transcription start site region 14678	775 bp downstream