rs36790214 SNP Detail

Summary

• ID
  rs36790214
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:146183617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACTGATTT TCTCCTCCTC
  TGCTCTTGCC TTGACTTCTC TGATTCATAT TGCCTGTGGT TTTGTTCTAG ATCTTGTCTT
  TTTTTCCTAG TTGCGCTTAG TGCTGGCCTT TCTTGCCTTC ATAGAGTGGG AACCCAGCCC
  CTTCTGATGC AGAAGTGACC CTTGCTGATT GATTAGCAGA AAGGCCACTT ATTCTTAGGG
  R
  CTTCTAATGC TTTTATAATT AAACTTTTAG GTAATAAACA AAAGTAGGTA TTGCAGTGAC
  ATTTTGATAC ATACATAATT TGTTTTGCTC TTATTTGGGT CTACTAGTGC CCTCTCTCAT
  GCCTCCTCTC CTTGCTGGTC CCTTATGCTT CTCTGCAAAG AGGTCCCCCT TCTACTTGCC
  TGACATATAT TCCATTACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51539022	NES14871301	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36790214					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51539022	NES14871301	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:146183617 () rs orientation: forward

Symbol	Name	Function Class
Cdk8	cyclin dependent kinase 8	Intron
Gm15739	predicted gene 15739	1744 bp upstream
Rr624626	regulatory region 624626	979 bp distal
Rr624627	regulatory region 624627	1897 bp proximal