rs36789786 SNP Detail

Summary

• ID
  rs36789786
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87824143 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACTCCAG CCATGCACGC
  ACATGCGTGC ACACACACAC ACACACACAC ACACACACCA CTTGCAGAAA TTGCCGATAC
  TCTGGAGATG GAAGCAGGAG GATCAGAAGT TCGTGCTTGC CACACAAGTC AGATTACCTG
  AGTTCTATTC CTGAGTCCAA AAAAGCTGGT TGAACTACTA GGCTAGTTGG AATGCAGACA
  R
  GGGACTCCTG GTCGTGTATC ATCTGCCTCT AGAATATGGA AGGAGAGGCC TGATTTCCTG
  GAATAGAACT TCTAACCCCC GTAGGTGTGT GGTGCCACTG GTGTCTGCAC TCAGGCATAT
  ACAAAAAGAC ATACTTTTCA GAACCGAGGA CTAAAAAGGG CCTTGTGCTG GGCTAAATTC
  CCAATCCCAG CAAGTAAAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51575540	NES14667432	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36789786					SNP	G	G	A	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575540	NES14667432	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87824143 () rs orientation: forward

Symbol	Name	Function Class
Gm64606	predicted gene, 64606	1589 bp downstream
Hdgf	heparin binding growth factor	704 bp downstream
Rr579572	regulatory region 579572	343 bp proximal
Tssr29850	transcription start site region 29850	1891 bp downstream
Tssr29851	transcription start site region 29851	1756 bp downstream
Tssr29852	transcription start site region 29852	1741 bp downstream
Tssr29853	transcription start site region 29853	1653 bp downstream
Tssr29854	transcription start site region 29854	1509 bp downstream
Tssr29855	transcription start site region 29855	1324 bp downstream
Tssr29856	transcription start site region 29856	1288 bp downstream
Tssr29857	transcription start site region 29857	1264 bp downstream
Tssr29858	transcription start site region 29858	1233 bp downstream
Tssr29859	transcription start site region 29859	1201 bp downstream
Tssr29860	transcription start site region 29860	1053 bp downstream
Tssr29861	transcription start site region 29861	1031 bp downstream