rs3678216 SNP Detail

Summary

• ID
  rs3678216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:16715634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTCACAG GAATGGATGC
  ACACTGTGTT TCCTATGCTG CACAAACAGT CCATTTATAT TCAGAATAAT TACTTTTTAA
  AAATTTTAAT ATTTATTTTT TACTTGAGTG CCTGTGTATG TGTATGTGTG TATCTATCTA
  TGTAGGTGCC AGAAGAGACC AGGGAAGGCA TCAGAAATCT GAAAGTGAAG TTACAAGTAG
  Y
  TAGGTTTATT AATTAAGTAA CTAATTTATT ATTATTATTA TTATTATTAT TATTATTATT
  ATTATGTTTT TTTTCCCAGA CAGGATTTCT TTGTGTCTTA GCTATCCAAG AACTCTCTTT
  GTAGACCAGG CTGGCCTCTA ACTCACAGAG ATCCACCTGC GCGTGCCTCC TGAGTGCTGG
  GATTAAAGGC ACGTGCCATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	C57BL/6J
ss5054227	WI_WGS_7_12120963	WI	MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	C57BL/6J
rs3678216					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16715634 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	1374 bp upstream
Rr642834	regulatory region 642834	903 bp distal
Rr642835	regulatory region 642835	887 bp proximal
Tssr64666	transcription start site region 64666	1356 bp upstream
Tssr64667	transcription start site region 64667	1464 bp upstream