rs36770219 SNP Detail

Summary

• ID
  rs36770219
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:16717418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCATCTTC AAACTCTCCT
  TGGAGCAACC TTGCCTAAGA CCTGGGAGCC ACGACTACTC AGCTCCAATT CCGTGGCTGA
  CGTGAGTCAC TCGCAGGGGG CAGGCTGCAG ACGGCTGGGC TGGGCAGGGG TCCTCTTGAC
  TGAGTTGGAC CAATTGGGAC TATCGGTAGC CTCACCTGTG AGGCCTTGTT TTCTCATCAC
  Y
  CTTGAAAAGA GACTTCAGCA TCCTGGATCC TTCTGTGGTT TCTCGAGGCA GCTCCACAGC
  GCAGCAGCGC GCGTACAGCT GCCTCAAGGA GTTGGGCAAA ATGGTATTTG GAGTGCAGGA
  CATTGCATTG TTAGAACATG GTTGCAAGGC CTTGGAGGTA GACAGTTACA AGTCCTTGAT
  GATCTTGGGG ATCCCAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51882123	NES14903437	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	C	C	C	T	T	T	C	T	C	C	T
ss148401940	ENSMUSSNP2095752	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36770219					SNP	C	C	T	T	T	C	C	C	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51882123	NES14903437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:16717418 () rs orientation: forward

Symbol	Name	Function Class
Pnma8c	PNMA family member 8C	mRNA-UTR
Rr642835	regulatory region 642835	397 bp distal
Tssr64666	transcription start site region 64666	343 bp downstream
Tssr64667	transcription start site region 64667	310 bp downstream