rs36716788 SNP Detail

Summary

• ID
  rs36716788
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162693180 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCCAAGTC TTACCTTTTG
  AGTGTGTTTT AAATTGACTT GGAGACCTTA CTGTTTTTTG TTTTTTTCAG AAGATTATCC
  TCTAACTGAG GGTAATTAGC ACTGGATCAG TTAACCAGTA TGACTCACTT ACACGTTCAC
  TAGGAAGGCA TCTTTATTCA CGCAGGCAGG TACCCCCACA TTCTTCTTTA GTGTGTGCCA
  W
  TATCTCAGAA TACTGACAGG CACAGACTGC CCTATCAGAG CATATCCCTA AATGGGTTGT
  GTCAGTTCAA GCGTTAGCAC TTGTAGTATA TTCAGATGGA TAATTGGGAC CTGGGCTGGA
  ATAAGAGTAT GTTCTGAGAT TTGTAACCTC TTAACAGCAG ACATTTACTT CCTCAAGCCT
  AATCCTAAAC CATCTACCAC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51396482	NES14462599	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36716788					SNP	A	A	A	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51396482	NES14462599	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162693180 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	1056 bp distal
Rr422027	regulatory region 422027	232 bp distal
Rr422028	regulatory region 422028	845 bp proximal
Rr422029	regulatory region 422029	989 bp proximal
Tssr14673	transcription start site region 14673	748 bp downstream
Tssr14674	transcription start site region 14674	814 bp downstream
Tssr14675	transcription start site region 14675	829 bp downstream
Tssr14676	transcription start site region 14676	852 bp downstream
Tssr14677	transcription start site region 14677	872 bp downstream
Tssr14678	transcription start site region 14678	891 bp downstream