rs3669139 SNP Detail

Summary

• ID
  rs3669139
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:66296230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT CTTGACAAAA ACCATGCTGA
  Y
  TTAGATATAA GAATTACTGT TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
ss5045098	WI_WGS_2_67222884	WI	MOUSE	f	SNP	T		C
ss45367091	mCV24268803	ABI	CRAMUS_MOUSE	f	SNP	T	C	C
ss146717052	ENSMUSSNP2209727	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320324040	CHEV_2_66303943	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	C57BL/6J	LG/J	SM/J
rs3669139					SNP	T	C	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66296230 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	within coordinates
Rr558185	regulatory region 558185	482 bp distal
Rr558186	regulatory region 558186	40 bp distal