rs36689176 SNP Detail

Summary

• ID
  rs36689176
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:87354927 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAGATCCA GTGTTCAGTT
  GAAAATGAGT ACATTTATGC TATTCAGTGA TGGATCAATG ACACAGACAA ATAATACCAA
  AGAGTGAGAA TCTCCACACA GCACACTGAA GTTAGACACT GAGTTCTGAT CCTGTCTACA
  CGGCCCCATC TATCCTCCTT TATCAGCCGA TTTACCTTCT TTTGCAAGTT TCATTGCAGT
  W
  ATACACTGTG GGTAAAAACG AGCTTTTTTC CAGACACAGC AGTCAGAGGA GAAAATGACT
  TGAGATCCCA GAATGCCCTT TATTCAAAAA CTGGACAGAG AAAGCCATTT ACAATGTAAA
  GTACGGTCCA CTATGCTTCC CAGTGTCTTC AACACCATTC TTCTCTGTTA CATCATCTAG
  ACAATGAATG CTATCGACTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51741460	NES14797734	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36689176					SNP	A	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51741460	NES14797734	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87354927 () rs orientation: forward

Symbol	Name	Function Class
Gkn2	gastrokine 2	Intron
Tssr1924	transcription start site region 1924	1405 bp upstream
Tssr57540	transcription start site region 57540	182 bp upstream
Tssr57541	transcription start site region 57541	1340 bp upstream
Tssr57542	transcription start site region 57542	1418 bp upstream
Tssr61887	transcription start site region 61887	292 bp downstream
Tssr61888	transcription start site region 61888	1519 bp downstream