rs3668483 SNP Detail

Summary

• ID
  rs3668483
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:98307349 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGAT TTGACTCTTG CAGCATCTCC
  R
  TGAGACAGGC GTAATTAAGC TTCAC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss5044440	WI_WGS_7_88447809	WI	MOUSE	f	SNP			A	G
ss46069101	mCV24171264	ABI	CRAMUS_MOUSE	f	SNP	A	A		G	A
ss145478320	ENSMUSSNP5271636	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A			A
ss322343294	CHEV_7_105806652	CHEVERUD	SCREENING_POP	f	SNP						A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs3668483					SNP	A	A	A	G	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:98307349 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930558N01Rik	RIKEN cDNA 4930558N01 gene			191 bp downstream
Emsy	EMSY, BRCA2-interacting transcriptional repressor			mRNA-UTR
				Noncoding-Transcript-Variant
Rr368380	regulatory region 368380			1161 bp downstream
Rr651647	regulatory region 651647			1981 bp distal
Rr651648	regulatory region 651648			1607 bp distal
Rr651649	regulatory region 651649			1799 bp distal
Rr651650	regulatory region 651650			1213 bp distal
Rr651651	regulatory region 651651			1511 bp distal
Rr651652	regulatory region 651652			468 bp distal
Tssr68029	transcription start site region 68029			1983 bp downstream
Tssr68030	transcription start site region 68030			1941 bp downstream
Tssr68031	transcription start site region 68031			1196 bp downstream
Tssr73641	transcription start site region 73641			1618 bp upstream
Tssr73642	transcription start site region 73642			1542 bp upstream
Tssr73643	transcription start site region 73643			1329 bp upstream