rs36662458 SNP Detail

Summary

• ID
  rs36662458
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83899422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AATCCAATCC AAGGCACCAG CGAAAAGCTG AACTTCTTCA
  CAAGATCACC TCAGACAAGG AAGGGTTTGC TAGGTCATTG CCACTGGGCT ACATGCCCAA
  S
  TCCTTTACTT TCCTCTCATA CCTGCCCACA GATTTCCTCT ATAAACCTAT CACCATAAAT
  TAGCAATCTT ATGAGAAGTC AGTTCTAACA CTGGAAGCTG                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss51569603	NES14675102	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	C	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs36662458					SNP	G	G	G	G	G	G	G	G	C	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569603	NES14675102	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83899422 () rs orientation: forward

Symbol	Name	Function Class
Rr578944	regulatory region 578944	96 bp proximal
Rr578945	regulatory region 578945	654 bp proximal
Rr578946	regulatory region 578946	1346 bp proximal
Rr578947	regulatory region 578947	1925 bp proximal
Tmem131l	transmembrane 131 like	Intron