rs36645624 SNP Detail

Summary

• ID
  rs36645624
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87415260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAAAC TCAGACCAAG CTTAGCTGTC
  M
  CGGTTACATT CTGAGGGGTC AAACT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss51577820	NES14674287	PERLEGEN	MM_PANEL2	f	SNP			C		C		A	C	A		C
ss135463116	ENSMUSSNP2601561	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320833947	CHEV_3_87311875	CHEVERUD	SCREENING_POP	f	SNP						C				C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs36645624					SNP	C	C	C	C	C	C	A	C	A	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51577820	NES14674287	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87415260 () rs orientation: forward

Symbol	Name	Function Class
Gm40085	predicted gene, 40085	within coordinates
Gm56788	predicted gene, 56788	231 bp upstream
Rr397759	regulatory region 397759	1177 bp downstream
Rr397760	regulatory region 397760	283 bp upstream
Rr579500	regulatory region 579500	694 bp distal
Rr579501	regulatory region 579501	42 bp proximal
Rr579502	regulatory region 579502	384 bp proximal
Rr579503	regulatory region 579503	450 bp proximal
Rr579504	regulatory region 579504	985 bp proximal
Rr579505	regulatory region 579505	1180 bp proximal
Rr579506	regulatory region 579506	1210 bp proximal
Rr579507	regulatory region 579507	1486 bp proximal