rs36627666 SNP Detail

Summary

• ID
  rs36627666
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:81964125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAACTGGT TGGAGCTGGA
  TGGAGTAAGG ATTGTTTTTT TTTCCCACTG GAAATGCAAA GGAGGACACA GCCTTTTGTT
  TTTGTCAATT ACAGTAGCAA AGAGCCTTCA CACACACACA CACACACACA CACACACACA
  CACACACACA CACACACACT TCTGCTTCTT GAGTCACCCC TTCCTGAGAG CCAAAAGAGG
  Y
  GCTCTTCCTC AAGCCACCGC ACGGTGGCGC CTCCTCACAG TCCCGGGGCC TTTCACAAAG
  CGGCTTTTGT CCCTGCGGGC AAGCAAGCAC AGCCACTGTT CCCTGAGCAG AAACCTTGTC
  CAGGAGTGAC CCCACTTGAG CTCACGAGGT TGTCGTTCAG TTGAGTCACA ACCATCACCC
  AGGTGCCAGC TGGTCCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51347839	NES13740462	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36627666					SNP	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51347839	NES13740462	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:81964125 () rs orientation: forward

Symbol	Name	Function Class
Gm20383	predicted gene, 20383	within coordinates
Gm44202	predicted gene, 44202	369 bp upstream
Rr632571	regulatory region 632571	within coordinates
Rr632572	regulatory region 632572	13 bp proximal
Rr632573	regulatory region 632573	432 bp proximal