rs36616740 SNP Detail

Summary

• ID
  rs36616740
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:87355211 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAAAACTG GACAGAGAAA
  GCCATTTACA ATGTAAAGTA CGGTCCACTA TGCTTCCCAG TGTCTTCAAC ACCATTCTTC
  TCTGTTACAT CATCTAGACA ATGAATGCTA TCGACTCCCC AGAGTATACC TGGGTCAGGT
  ACAACCCTCT GAAGTCTCTG ATCACGAAGG TGGACTGGTT CCTGTTTGGG TCGCCTATTC
  R
  ACAGCTATGC AAGCACATGC CCCTGTATGA GGGTGAGGTG GCTACAAAGC CAAGTGAGTA
  CCATTGAAGC CAAACAAGTT CTGGAGACTT CTGCATGCCA CACAGTCCAG GGGGGTGGGG
  GTGGGGCTGT GTGAATTACG CATAAGTGAG AACATGACTT TGTTCAGTTA CTTCAGGAAT
  AACTTAACTT AATAGTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51741454	NES14797736	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36616740					SNP	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51741454	NES14797736	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87355211 () rs orientation: forward

Symbol	Name	Function Class
Gkn2	gastrokine 2	Coding-NonSynonymous
Tssr1924	transcription start site region 1924	1121 bp upstream
Tssr57540	transcription start site region 57540	88 bp downstream
Tssr57541	transcription start site region 57541	1056 bp upstream
Tssr57542	transcription start site region 57542	1134 bp upstream
Tssr61887	transcription start site region 61887	8 bp downstream
Tssr61888	transcription start site region 61888	1235 bp downstream