rs36611054 SNP Detail

Summary

• ID
  rs36611054
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:45887716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCCTGATT CATGTACTCT
  CCTCCTGTCT GGAGGAAAGT TCTCTAGGGT TTTGTGTTAG AAAGGCCAAT GATAGGCAGC
  TTGCCTTTGT GATGCTGTCT ATTAACAAGT GAGCTCATGG ACTGGACCCA GGCAGGGGTC
  GAGGAAGCTC TACAGGTGCC CACAATAGAT CACACACAGT CTTCTCAGCT CCTACTAGTA
  K
  CTCTGAGAAT ACAGGCTAGC TAGGTAAGAG CCACATAAAA ATGACTAAGC TCAGTCCAAA
  CCTCTGTCCT TGCTGAAGAT CACCTTGCTC AGCTATTTTT GATAGAGTGC TGTGGTTGTG
  AGATTGTGCT GGCCTTGATC AGCATCCCAG AAAGAAGTGT CTGCTGGGAA ACCTAGGCCC
  CAGGATGATC CATCTTATCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss50833114	NES13519708	PERLEGEN	MM_PANEL2	f	SNP	T	T	G	T	T	T	G	T	T	G		G	G	G	G		G
ss325821544	CHEV_19_45973767	CHEVERUD	SCREENING_POP	f	SNP											G					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs36611054					SNP	T	T	G	T	T	T	G	T	T	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50833114	NES13519708	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:45887716 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Armh3	armadillo-like helical domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr548612	regulatory region 548612			1654 bp proximal