rs36581646 SNP Detail

Summary

• ID
  rs36581646
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123181242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGCTGAGC TCTGGAGTCT
  ATGAAGGCTC AAAGATCAAA AAATATATGA ACATGCCGGC TCCTTCCTTC TGTCCCATCA
  GCTCTAGGCT GTTATTCCAA TACATGTTCT CCATTTAAAA TAACTATGTG AACTGGGATC
  TCCTGCATGA AGTGGGGCTG AAAACCAGTG GATCCACACT ATCTCACAGT ATTTATGAAG
  Y
  CAATGAGATC CATCAGAGAA TTGTTGGATT TTTTACAAAG GGATATGACT TTTAAAATCT
  CCCCACCACT GAAGTTTTAA AAAATTAGAC TGCATCAGTA CACCTGTAGA TTCTGACATG
  CCTGTTTGTA CATCCGTTCA TCTCAGGGTA AGGATCACAA GTGTGTGCGA GTGGGATAAG
  AGGGAGATGA AAACAAAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51023242	NES13907527	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36581646					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023242	NES13907527	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123181242 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	1525 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	1603 bp upstream
Rr397990	regulatory region 397990	1540 bp downstream
Rr584510	regulatory region 584510	1673 bp distal
Rr584511	regulatory region 584511	995 bp distal
Tssr35499	transcription start site region 35499	1921 bp upstream
Tssr35500	transcription start site region 35500	1600 bp upstream
Tssr35501	transcription start site region 35501	1583 bp upstream