rs3658036 SNP Detail

Summary

• ID
  rs3658036
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:78798628 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCTAC GACGAGCAGT TTTCCTTCTC
  Y
  AGGTTGACCG AGGCGTGCGC GCACC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5033944	WI_WGS_15_79638548	WI	MOUSE	f	SNP	T	C
ss325025963	CHEV_15_78744858	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3658036					SNP	T	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:78798628 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700027A07Rik	RIKEN cDNA 1700027A07 gene			within coordinates
Cpgi7305	CpG island 7305			within coordinates
Gm49510	predicted gene, 49510			Intron
Pdxp	pyridoxal (pyridoxine, vitamin B6) phosphatase			Coding-Synonymous
				Noncoding-Transcript-Variant
Rr404490	regulatory region 404490			486 bp downstream
Rr505452	regulatory region 505452			1929 bp distal
Rr505454	regulatory region 505454			499 bp distal
Rr505455	regulatory region 505455			645 bp distal
Rr505456	regulatory region 505456			1185 bp proximal
Rr505457	regulatory region 505457			1394 bp proximal
Tssr132011	transcription start site region 132011			518 bp downstream
Tssr132012	transcription start site region 132012			501 bp downstream
Tssr132013	transcription start site region 132013			462 bp downstream
Tssr132014	transcription start site region 132014			22 bp downstream
Tssr132015	transcription start site region 132015			within coordinates