rs3657805 SNP Detail

Summary

• ID
  rs3657805
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  107
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:69715820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAGTTTGGGC TCCTGGGGCT TCACAGCACG GGAGCTGCAG
  GGAAGTCTAC CTAACCCGAA ACTCCCCAGC GGTGCAGGGT GGGGGTGGGG TGGAGGGTCG
  R
  GGACAGACTA TTTAGGACTC AGCGAGGGGA TCCCACGAGC CTCGCGGGGA TCGCCGCCCG
  TGGAACCCAG ACGCTCCAGG AAAGCACTCG TATGCCTCT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
ss5033713	WI_WGS_2_70663572	WI	MOUSE	f	SNP	A	G
ss320332412	CHEV_2_69723533	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	C3H/HeJ	C57BL/6J	LG/J	SM/J
rs3657805					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:69715820 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11720	CpG island 11720			within coordinates
Mettl5	methyltransferase 5, N6-adenosine			mRNA-UTR
				Noncoding-Transcript-Variant
Mettl5os	methyltransferase 5, opposite strand			206 bp upstream
Rr397023	regulatory region 397023			291 bp downstream
Rr558487	regulatory region 558487			1377 bp distal
Rr558488	regulatory region 558488			129 bp proximal
Rr558489	regulatory region 558489			149 bp proximal
Rr558490	regulatory region 558490			217 bp proximal
Tssr24451	transcription start site region 24451			81 bp downstream