rs36549681 SNP Detail

Summary

• ID
  rs36549681
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123181175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GATCAAAAAA TATATGAACA TGCCGGCTCC TTCCTTCTGT
  CCCATCAGCT CTAGGCTGTT ATTCCAATAC ATGTTCTCCA TTTAAAATAA CTATGTGAAC
  Y
  GGGATCTCCT GCATGAAGTG GGGCTGAAAA CCAGTGGATC CACACTATCT CACAGTATTT
  ATGAAGTCAA TGAGATCCAT CAGAGAATTG TTGGATTTTT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51023244	NES13907524	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36549681					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023244	NES13907524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123181175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	1458 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	1536 bp upstream
Rr397990	regulatory region 397990	1473 bp downstream
Rr584510	regulatory region 584510	1606 bp distal
Rr584511	regulatory region 584511	928 bp distal
Tssr35499	transcription start site region 35499	1854 bp upstream
Tssr35500	transcription start site region 35500	1533 bp upstream
Tssr35501	transcription start site region 35501	1516 bp upstream