rs36548688 SNP Detail

Summary

• ID
  rs36548688
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:101039397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGGCACAG TTCATTGGCT
  CAGGGCTACA TTGGTCACAT CATCCGATCT TACGTCGTGG TGCATCTGCG CAATGCAGCT
  CAAGGTACGT GGCTATCTTG AGGAATACGA GGAAGTCAAG TGCCAGTCAT AAGACTTGGC
  AGCAGTCCCG GGCGCCATCT TAGGGCCGAG GCCATGCCCG CTCCTCACAT CTGTGAGCAG
  W
  GTGTGTGGAC AGTTACCGTT GGCTACTGCA AATGTCAGGG CCATATGAAC TCAAAGAAGA
  AGGAATTATT GGTCCCAGAA AAGAGGGGAA AAGAATGCCA GTCAGCGGAT ACATGTACAT
  GAGTGCACAC ACACACACAC ACAATTTAAA AACAAAAAGG AATATATAAT CTCTACTATT
  CCATAGCTCT GTGAGTTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51390357	NES13730591	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36548688					SNP	A	A	A	A	A	A	T	A	A	A	T	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51390357	NES13730591	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:101039397 () rs orientation: forward

Symbol	Name	Function Class
Gm43948	predicted gene, 43948	within coordinates
Gm43950	predicted gene, 43950	within coordinates
Rr635751	regulatory region 635751	1618 bp proximal