rs36546798 SNP Detail

Summary

• ID
  rs36546798
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:87356687 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTGTTTGT TCCTTTCATG
  GGCAGGCACA GTGGGAAGCC AAGCAACATT GATCTTAGTG AATAGAAGGA CTTCATATAA
  GATAAATAAT GTATGAAAGT GTCCAGATGA TGGGGCACGT GCAATCTAAC CAGTGGGGTA
  TGAGCCTCTG TCTCTCTGCA GCTCCCTGCA GACCAGCTGA ACACCTAAGA TCTCAAGGTT
  Y
  AGACATTAGG GGTGAGCAGG GACAAGGACA GTGGCAATGC CTTTCCTGGG AAGAGGGTGG
  GGCTTGGTAT ATTACCTCAT TGCCCTAATG AAGAAAGTTC CCTCTTCTGA TCAATGAGTT
  GGCTTTAAGG GCCATTCGGG TGCCTTTTAG GACATGCGTT TTAATTTGCT GAAGCGGCAG
  ACTTGGCCAC AGTGAACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51741436	NES14797742	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36546798					SNP	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51741436	NES14797742	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:87356687 () rs orientation: forward

Symbol	Name	Function Class
Gkn2	gastrokine 2	211 bp downstream
Tssr1924	transcription start site region 1924	349 bp downstream
Tssr57540	transcription start site region 57540	1564 bp downstream
Tssr57541	transcription start site region 57541	413 bp downstream
Tssr57542	transcription start site region 57542	331 bp downstream
Tssr61887	transcription start site region 61887	1430 bp upstream
Tssr61888	transcription start site region 61888	206 bp upstream