rs36537398 SNP Detail

Summary

• ID
  rs36537398
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:123178748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTCTAGA GAGAGGAATC
  TTAGAGAATT CTCTGGTGAG GGCTGGCTAG GGAAAAACGT TAAAATTTGG AAACCTAGTC
  CTAATGTACT AGTGAACGTA ACACCTCCTG TCTCTAATAA ATTACCAAGT AAGGATTCAA
  ACGTTTGGTT GAAGGTAGAC TGTGTTCTAA GTGCAGAATC TAAAATTTGC TCTAACTTAG
  S
  TGGCTTCCAA TGAGTCTTTC GACAGGATCT CAAGAAAATA ATCAAACTTC CTTCAAAACC
  AATATCAAGA AAAGATTAAG AACATGCACT GCTCTTCCAA AGGACCTGAG TTCAAGTCCC
  AAGCACCCAC ACCAGGAGGC TCACAACTAC CTGTAGTTCC AGCTCCAGAA AGATCCAACA
  CCTCTGGCGC TGTGCTCACG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51023286	NES13907608	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36537398					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51023286	NES13907608	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123178748 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	627 bp proximal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	Intron
Rr397990	regulatory region 397990	653 bp upstream
Rr584510	regulatory region 584510	85 bp proximal
Rr584511	regulatory region 584511	822 bp proximal
Tssr35499	transcription start site region 35499	569 bp downstream
Tssr35500	transcription start site region 35500	826 bp downstream
Tssr35501	transcription start site region 35501	895 bp downstream