rs36495888 SNP Detail

Summary

• ID
  rs36495888
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:45888130 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAACAGGG GAGACCACAC
  AGCCCCGTGG GGCTGCAGCA ATTTCCTCAC TCCAAAGCCC CCCCCTATAA AGGGTTCCTC
  AGTTTCCCAG AGGAGGGAGG CTAATCCCCG CTGTGTGTGC TAACCAACAG CCTCCTCTGA
  GGAGCGGACT CTGCCCTCTC TTTGCCTCCT AGCACCCTTT CCTCCCTCAA TCATAGCACT
  Y
  ACAACAGTAC TGTGAATAGA TGAGCTCCTA ACAGACTTCA TTAACTCACA GGAGGCAAGA
  GAAAGAGAGG GCAGAGCAGG AGGAGTAGAG AAAGACATGG CTCCTAACAC AGCCAATCCA
  GAATAGCAGC GATGCGGCTT CAGCGGTGCC CGTGTGGTAA TTAACGAGCA CCAGACCCGG
  AGGATGGGAA CTGGCAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss50833098	NES13519723	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T		C	C	C	C
ss325821546	CHEV_19_45974181	CHEVERUD	SCREENING_POP	f	SNP									C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs36495888					SNP	T	T	T	T	T	C	T	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50833098	NES13519723	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:45888130 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Armh3	armadillo-like helical domain containing 3			Intron
				Noncoding-Transcript-Variant
Rr548612	regulatory region 548612			1240 bp proximal