rs36483924 SNP Detail

Summary

• ID
  rs36483924
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:64870809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATAACCC ATATTTTGCA
  TGGTCTATGT GGCTAACTCT TAACAAAGAA GACTAAGAGT TGGTGACTCT AAAGGTGTCT
  GGCAAGAACC CTTCACCGAG TACCTGAGCC CTAAGTACCC TGCTCTGCTC AATTAAGATT
  CCATCAGGTA TTGAGGGGAG TACCATCCTC CCTGGCAAAA GTGAATTGAG GTTAGAATAT
  R
  AAGATGTTTT TAAATATCAG CAGTATTAGC ATCCCAAACC AGATCTGTCT GAAACTAGTA
  AGTGGAAATT ACTGGAGTAG TTCAGTATTC AGCACACAAA CACATGGGTG AAAATTTAGT
  TACAGCATTC TGATAGAGAT TTCACCTTGT AACTCATATT CCTTATGATC TAGGACAGTG
  GCTTTACTGC ATCCTAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51536684	NES14687984	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	G	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36483924					SNP	A	A	A	A	A	G	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51536684	NES14687984	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64870809 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm54196	predicted gene, 54196			within coordinates
Kcnab1	potassium voltage-gated channel, shaker-related subfamily, beta member 1			Intron
				Noncoding-Transcript-Variant
Rr577647	regulatory region 577647			1073 bp proximal