rs36439885 SNP Detail

Summary

• ID
  rs36439885
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83810805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGTCTGAC AGATGAGGGG
  TCACCGAACA CTCATGTCCT GACAGGAAGG ACTTATTAGA GGACTTATTA GCAACTGACA
  GTGGAGAAGG GGCAGGAATG GGCGAGACTC CCAGGACAGG AGGAGGCAAC AGGAGAGAAG
  CAGACGGCCT TCCATGGTAG GCCAGTGTGG GTGAGGAGAA CTTCTGAAGG TCTGGAGTAA
  R
  AAGCAAGAGC AACTAGATTG AGGCAGAAGG CAAGTAGACC AGGACAGCGG ATGCCGCTGT
  GGGTAGTTGA GAATAGCAGA CCTGCTGGGG CTGGGCAGGA CTAGCAACAC CACCATGAGC
  TTTGCAAAGG CAGTTACCTA TGGAGGTCAA GGAATTCACT CCCCAGGGGC CAGGCATTTT
  TGCAGGGCAG GGGCAAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51570788	NES14676602	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36439885					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51570788	NES14676602	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83810805 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm65015	predicted gene, 65015			within coordinates
Rr578926	regulatory region 578926			480 bp proximal
Rr578927	regulatory region 578927			1729 bp proximal
Tmem131l	transmembrane 131 like			Intron
				Noncoding-Transcript-Variant