rs36431913 SNP Detail

Summary

• ID
  rs36431913
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:83900571 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGCTGGCT GGAGGGACCC
  ACATGCCGGT GGGAAGCAGC AGCACTTTTT CCCTACTGCC ACTAGAAGGC TGGCGACAGG
  CCCTGTGCAC ACCCAGTGTT CCGAGGCCGT GAAGAAGCGA TACAGAATGA GCAATGGAAA
  CAGTCACCTC CTGGGCAGAT TGCCACTCAG TCACTCAACC TTAGGAACAT TTGTGAACGA
  Y
  GCAGCTGCCA GGACACCAGG ATACAAAAGA ATAGATGCCA GAGGCCCTAG CTCTTGCAGA
  GCTCCCTCTG ACCAGAGGCA AACAAGAAGA GTGAGCAAGC ACTGGGCAGA GCATGTCTAG
  GTAGAAGCAG CAGGAAGCGC CATACCTCAC CCTCACCCCC ACCTCAGCAG GCTGTGAGAG
  GCACAGAGGG CTGGCCTTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss51569564	NES14675080	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs36431913					SNP	T	T	T	T	T	C	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51569564	NES14675080	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83900571 () rs orientation: forward

Symbol	Name	Function Class
Rr578944	regulatory region 578944	860 bp distal
Rr578945	regulatory region 578945	within coordinates
Rr578946	regulatory region 578946	197 bp proximal
Rr578947	regulatory region 578947	776 bp proximal
Rr578948	regulatory region 578948	1996 bp proximal
Tmem131l	transmembrane 131 like	Intron