rs36421716 SNP Detail

Summary

• ID
  rs36421716
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:46199227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTTAAGC TTAAAACAGG
  TAGGATTTTG TTCCTGTTGT TTTAGTCTTT ATTCTCTGGT CAAGCTTATG AAAGTAGGCC
  AGCTTCTACT GTCATCTTTA AGGTAAAGTA TAATTATTAA AACCCTGGCA GCTGTTCATT
  TGGATCTCAG AGTATGAGAG TCAGTGTGAC ATTATATGTT GGATGAATAT GAGACAAATA
  R
  TGAGCTTTTG AGATGTTAGT AAAACTGTAC ATGCAAACAT GTGTCTATAT GACCTTTAGG
  TCTAAAAATA GGACAAGATA ACATACACTC AATTTTAGCA TAGTTTCTAG AATTTTGAAT
  GGGAGCAATG TCTTTGTAAT GTATTCTCAA CTGAAACATC TTTTCCAAGC TGTGAGAAAA
  TATTAAGATA CAAACTATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss50535117	NES14089818	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36421716					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50535117	NES14089818	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:46199227 () rs orientation: forward

Symbol	Name	Function Class
Sorbs2	sorbin and SH3 domain containing 2	Intron
Sorbs2os	sorbin and SH3 domain containing 2, opposite strand	within coordinates
Tssr77160	transcription start site region 77160	427 bp upstream
Tssr77161	transcription start site region 77161	480 bp upstream