rs36421580 SNP Detail

Summary

• ID
  rs36421580
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68670798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGTAAAATAA AATCTTTAAA
  AACCTGGCTG TGACTGAGTT CTTTGTCATC ATCGTCATCG TTTGAAAATG ATTTGAAAAA
  TGATTATAGA TTAGATGAAC CAAGTTGAGG AGGACAGGAA ATTATTATGA TTACAGAAAC
  ATTTTCTGCA TTTGACGTGA ACATTTTGTG CGTTTGCTAG CCAGTGCGGT AAATAGTCCC
  R
  CCATGCTCAT GAGACCAAAA GTAACTTCAA AAGAGCACCC TGTTTTTCAT CCAGGCTGTC
  TTTCATAGAA CAAAAGCCTG GTGGATCTCT AAGGAGTCCG TGGTAGGGAG TGGGAAAACT
  GACGCACTGT TAGGAGAACA CAGACTGGGA AACACTTGGG TACCTCTCAA GAAGACTGGA
  AAGACTGGGT TTTAAAACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	PWD/PhJ
ss51541514	NES14691041	PERLEGEN	MM_PANEL2	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	PWD/PhJ
rs36421580					SNP	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51541514	NES14691041	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68670798 () rs orientation: forward

Symbol	Name	Function Class
4930535E02Rik	RIKEN cDNA 4930535E02 gene	1461 bp upstream
Gm35584	predicted gene, 35584	792 bp downstream
Rr578078	regulatory region 578078	1817 bp distal
Rr578079	regulatory region 578079	991 bp distal
Rr578080	regulatory region 578080	266 bp proximal
Rr578081	regulatory region 578081	1244 bp proximal
Tssr29496	transcription start site region 29496	1985 bp downstream
Tssr29497	transcription start site region 29497	1384 bp downstream