rs36389252 SNP Detail

Summary

• ID
  rs36389252
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70094792 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAATCCAT CTTGCTTCCC
  CTGCCTGTCT GATGCTGCTC AGTTCATACT GGTTTATAAA TTCTGAGCAG CTGGGTTAGG
  CTGGAGGGGT CTATGCAAAG CAGCCAGCAA ATACAAAAGC AAATGCCTGG GCAGTGTGTG
  TGAGAGTGGA TGGTGTCAAT CAACAAAAAT GCCATCACAG AGAGCAAGAG GGATCACTGA
  R
  AGATATCAGC TTATAGCTCT TCAACAGCAA AGTACTAGGT GCTCTAACAG CAGCATTCAG
  TTAAAATCAA AGACATTTAA GTCAGTTAAC TTTTGAGGAG AGTTACCTCA GATTGACAGT
  CTTAGGGTGA TTATTTTAAA AAAAAAATCA CAGAAACAAA AAAAAAAAAA CATAGAAGAA
  AACATGCAAT AAAAGATAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51681315	NES14824746	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36389252					SNP	G	G	G	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51681315	NES14824746	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70094792 () rs orientation: forward

Symbol	Name	Function Class
Igk	immunoglobulin kappa chain complex	within coordinates
Igkv8-30	immunoglobulin kappa chain variable 8-30	191 bp upstream
Rr379563	regulatory region 379563	587 bp upstream
Tssr61309	transcription start site region 61309	151 bp upstream