rs36354698 SNP Detail

Summary

• ID
  rs36354698
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:27299743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACTTTCCACT GTGGGTTTTC TGGGGACAGG GGGCTTCAAT
  CTCAAATTTT AAGGAATGAA GACAGGGGCA CTCATGGGCT CTAGCTAATT CGGTTGATTT
  Y
  ATCTCACTCG GCACACATAC CCTAAGAACT TCCCCAGGGC AAGGCTGACC GACATTTTTA
  TTAGCAATAA TCTCTGCCTT CTTTTGATTA TCTGGAGATT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss50718283	NES13574367	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36354698					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50718283	NES13574367	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:27299743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10724	CpG island 10724	662 bp proximal
Gm35268	predicted gene, 35268	614 bp downstream
Gm50114	predicted gene, 50114	within coordinates
Kcnv2	potassium channel, subfamily V, member 2	mRNA-UTR
Rr545853	regulatory region 545853	1285 bp proximal
Tssr5470	transcription start site region 5470	257 bp upstream
Tssr155737	transcription start site region 155737	580 bp downstream
Tssr155738	transcription start site region 155738	175 bp upstream
Tssr155739	transcription start site region 155739	196 bp upstream
Tssr155740	transcription start site region 155740	266 bp upstream