rs36300927 SNP Detail

Summary

• ID
  rs36300927
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120679205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTTGCACTC CCTGGAAGAA
  GTCAAGACGC AAGGTGTTGC TGTTTTCTGT CTCCTTCAAG GATGTATTTA ATTATCACAT
  CTTCATGAGC GCAGAAACAG TTCTAATAGG GAGAGGGAGG GGAGAATGGC TGAGAGCTCC
  TCACTGTCTA GTCAAATCAA GTAGAAGCCC AGGCCACCTG CAGTAGAGAC ACGCTCTGAG
  S
  TTGTGCAGGA CTCTGAGGAG AGGGGACAGA AGGACATGCC AATTCTACCC CATAGCTCAG
  AGCGATGATA AACATCTCCC AGAGAAGAGA AAGGTCACCC TGGGAACTGG CCAGTGTGAA
  TGCTATTCCT TGGTGACCTT TATCTTGCTC TGACATATGT GGTGAAGATT CTCTGGACGG
  AACGAACATT ACAACAACTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51608924	NES14656074	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36300927					SNP	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51608924	NES14656074	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120679205 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	within coordinates
Rr583990	regulatory region 583990	1518 bp distal
Rr583991	regulatory region 583991	1686 bp distal
Rr583992	regulatory region 583992	463 bp proximal
Rr583993	regulatory region 583993	1006 bp proximal
Tssr35394	transcription start site region 35394	1172 bp downstream