rs36287651 SNP Detail

Summary

• ID
  rs36287651
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:85311135 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGCGTTCAT CCGTTCCATC
  AGCCTACTTC CACAAAAATC CGCTTCCGGA TTTTGTACCA CGCAGCACTC TCTTGCCTCC
  TTGCATGTAA CTCAGGCTAG CCTGGAACTA TGTAGCACAG GCTGGCCTCA AACTTGTGAT
  CCTTCTTCCT CTGCCTCCCA AGTCCCAGGA TTACAGGTGC CAGCCAGCAG ACAAACCATG
  R
  GCTTAAATAT CTTTCCTACT GTATGGTGGG GGAGGGGGAT GGATAAATCT TCAGTGCAGA
  TATAGGAAGG TTGACACTAG GTACTCAAAT GCTTTGGGTG ACTTAAATAT CCAGAGCTTA
  AGCATCCTGA GACCCTACTT CTTTTGATCT AAGGAGGTTT GGTCCAAGCC TAATTACTGA
  GGACCAGCAA CAGGGGTGCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51355967	NES13743413	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36287651					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355967	NES13743413	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85311135 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17641	CpG island 17641	134 bp distal
Rab11fip5	RAB11 family interacting protein 5 (class I)	809 bp downstream
Rr399729	regulatory region 399729	898 bp downstream
Rr399730	regulatory region 399730	436 bp downstream
Rr633175	regulatory region 633175	913 bp distal
Rr633176	regulatory region 633176	241 bp distal
Rr633177	regulatory region 633177	631 bp proximal
Sfxn5	sideroflexin 5	731 bp upstream
Tssr57414	transcription start site region 57414	1587 bp downstream
Tssr61744	transcription start site region 61744	712 bp upstream
Tssr61745	transcription start site region 61745	664 bp upstream