rs36286644 SNP Detail

Summary

• ID
  rs36286644
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:85312221 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACTAGGA GGACAAAGGG
  CAGAGCAGAG CTGTGCCTGC TTGCTGCCTG TCTGGCTGCA CTCTGCAGTA TGTGGTAAGG
  ATCAGACAAT GAACAAAACC CTGGCCTCAG TTCAGGACCT CTCTGCAGGA CACCCCTGCC
  CTGGCCATGT AGAGAAGCCA AACAGCAAGG ATGGATGAAA GATGAGAGAA GGGCTGGGAC
  Y
  AATTAAAGCC CAGAGGAAGA CCTAGAAGAG GGACTCAGTT CCTCAAAAGA CACCTCCAAC
  ACCCAAGGAC TGACCCTACC CCCAAACTCT GGGAACTGGT GGCTATTTTC TCATCTCTGA
  GTTGACCTAT AGTTGGTAAC TGCACAGTGG TGGACCCCAT TGTGGTTCAT CTGCTCTATG
  CTGGCAGAAG ACTGACGTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss51355963	NES13743415	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs36286644					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51355963	NES13743415	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:85312221 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17641	CpG island 17641	1220 bp distal
Mir705	microRNA 705	1053 bp downstream
Rab11fip5	RAB11 family interacting protein 5 (class I)	mRNA-UTR
Rr399729	regulatory region 399729	1984 bp downstream
Rr399730	regulatory region 399730	1522 bp downstream
Rr633175	regulatory region 633175	1999 bp distal
Rr633176	regulatory region 633176	1327 bp distal
Rr633177	regulatory region 633177	37 bp distal
Sfxn5	sideroflexin 5	1817 bp upstream
Tssr61744	transcription start site region 61744	1798 bp upstream
Tssr61745	transcription start site region 61745	1750 bp upstream