rs36286509 SNP Detail

Summary

• ID
  rs36286509
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87824117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATGGCCA TGCTGAACAC
  TTTACTCCCA CTCCAGCCAT GCACGCACAT GCGTGCACAC ACACACACAC ACACACACAC
  ACACCACTTG CAGAAATTGC CGATACTCTG GAGATGGAAG CAGGAGGATC AGAAGTTCGT
  GCTTGCCACA CAAGTCAGAT TACCTGAGTT CTATTCCTGA GTCCAAAAAA GCTGGTTGAA
  S
  TACTAGGCTA GTTGGAATGC AGACAGGGGA CTCCTGGTCG TGTATCATCT GCCTCTAGAA
  TATGGAAGGA GAGGCCTGAT TTCCTGGAAT AGAACTTCTA ACCCCCGTAG GTGTGTGGTG
  CCACTGGTGT CTGCACTCAG GCATATACAA AAAGACATAC TTTTCAGAAC CGAGGACTAA
  AAAGGGCCTT GTGCTGGGCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51575543	NES14667430	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36286509					SNP	C	C	G	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575543	NES14667430	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87824117 () rs orientation: forward

Symbol	Name	Function Class
Gm64606	predicted gene, 64606	1615 bp downstream
Hdgf	heparin binding growth factor	678 bp downstream
Rr579572	regulatory region 579572	369 bp proximal
Tssr29850	transcription start site region 29850	1865 bp downstream
Tssr29851	transcription start site region 29851	1730 bp downstream
Tssr29852	transcription start site region 29852	1715 bp downstream
Tssr29853	transcription start site region 29853	1627 bp downstream
Tssr29854	transcription start site region 29854	1483 bp downstream
Tssr29855	transcription start site region 29855	1298 bp downstream
Tssr29856	transcription start site region 29856	1262 bp downstream
Tssr29857	transcription start site region 29857	1238 bp downstream
Tssr29858	transcription start site region 29858	1207 bp downstream
Tssr29859	transcription start site region 29859	1175 bp downstream
Tssr29860	transcription start site region 29860	1027 bp downstream
Tssr29861	transcription start site region 29861	1005 bp downstream