rs36279383 SNP Detail

Summary

• ID
  rs36279383
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:34451812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA CCCTGGTGAA TAGTTCTAAA
  M
  GACAAGTATT GTAAAGTTTT ATATG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
ss51273215	NES13779288	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	C	C	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ
rs36279383					SNP	A	A	A	C	C	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51273215	NES13779288	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:34451812 () rs orientation: forward

Symbol	Name	Function Class
Bpgm	2,3-bisphosphoglycerate mutase	1479 bp upstream
Cpgi17283	CpG island 17283	1249 bp proximal
Rr399609	regulatory region 399609	1156 bp upstream
Rr628315	regulatory region 628315	1143 bp distal
Rr628316	regulatory region 628316	639 bp distal
Rr628317	regulatory region 628317	840 bp proximal
Rr628318	regulatory region 628318	1341 bp proximal
Tssr55509	transcription start site region 55509	1409 bp upstream