rs36249490 SNP Detail

Summary

• ID
  rs36249490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  126
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:162694553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTCACTTAG AGAAAATTGT TATTTTAAAA TGCACACATT
  ACTTACATTT ATTAAACACA TTTTAAAGCT CCTTTAACTG TAGATGATTG TCCAGGTGCT
  Y
  GGGAAATGCA AGACAGATGT GTGAGAAGTA CATAGCCTTC GAAGTCATGA GTCCTGGCTT
  CTAATGTGTT CACTAGCTTT TTTTTTTTTT TTTTTTTTT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss51396478	NES14462603	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs36249490					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51396478	NES14462603	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162694553 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	383 bp upstream
Rr422027	regulatory region 422027	1605 bp distal
Rr422028	regulatory region 422028	385 bp distal
Rr422029	regulatory region 422029	245 bp distal
Tssr14673	transcription start site region 14673	582 bp upstream
Tssr14674	transcription start site region 14674	552 bp upstream
Tssr14675	transcription start site region 14675	533 bp upstream
Tssr14676	transcription start site region 14676	516 bp upstream
Tssr14677	transcription start site region 14677	483 bp upstream
Tssr14678	transcription start site region 14678	368 bp upstream