rs33901086 SNP Detail

Summary

• ID
  rs33901086
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156287399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCGGTGT CTGGTGTTGG
  TTCATCTTTC TACCCAAGCT TGTTCCCAGA CCTCTGTGTT AGTTTCAGGC TCCTTGCTGG
  AAACAACGCT GCCCATGAGC AAATGCTGTT CGGCTGAGGA GACAAGTGGC TGTCTTGATC
  CTGCTCGGGT CTTGGGTAGG GCTGTGTGAG GAGCCTCAGT GGGTCCTGAC TTCACAGTCC
  Y
  GAGGATTTGC TTTCTAGTTT TTGGAGAAAT ATCCTTCTGG ATTTCCTACC AGGTGCTCAT
  GACTTGCCTC CCATACCCTC TGGTGCTTCT TCTCCAAAAC TAAGTGAGCC AGGAGCCCCC
  GCCCCGCCCA CTCTAACCCG AGACCTCTCG GATGCAACGT CGTCGGGTTC ACTTTCGTAG
  CCGGAGATCG GCTACGCGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46789443	NES10982882	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33901086					SNP	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789443	NES10982882	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156287399 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	342 bp upstream
Cpgi15503	CpG island 15503	within coordinates
Rr398932	regulatory region 398932	57 bp upstream
Rr606696	regulatory region 606696	1872 bp distal
Rr606697	regulatory region 606697	232 bp distal
Rr606698	regulatory region 606698	within coordinates
Rr606699	regulatory region 606699	373 bp proximal
Rr606700	regulatory region 606700	841 bp proximal
Tssr40795	transcription start site region 40795	350 bp upstream