rs33901085 SNP Detail

Summary

• ID
  rs33901085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156287265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGACATCAT CCCATCTGGT
  TTCTGTCACC ACTGATATCC TTATCCTTAC ACTGCACGAA GTCGTCCTTC CGCTGCCCTG
  TGATATCAGT TGATGTCACT TATCAGGTGA CCAGGACCAG TTGACCCCTC TCTAGTCTCG
  GTGTCTGGTG TTGGTTCATC TTTCTACCCA AGCTTGTTCC CAGACCTCTG TGTTAGTTTC
  R
  GGCTCCTTGC TGGAAACAAC GCTGCCCATG AGCAAATGCT GTTCGGCTGA GGAGACAAGT
  GGCTGTCTTG ATCCTGCTCG GGTCTTGGGT AGGGCTGTGT GAGGAGCCTC AGTGGGTCCT
  GACTTCACAG TCCTGAGGAT TTGCTTTCTA GTTTTTGGAG AAATATCCTT CTGGATTTCC
  TACCAGGTGC TCATGACTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46789440	NES10982881	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs33901085					SNP	A	A	A	A	A	A	A	A	A	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46789440	NES10982881	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156287265 () rs orientation: forward

Symbol	Name	Function Class
AW011738	expressed sequence AW011738	476 bp upstream
Cpgi15503	CpG island 15503	within coordinates
Rr398932	regulatory region 398932	191 bp upstream
Rr606696	regulatory region 606696	1738 bp distal
Rr606697	regulatory region 606697	98 bp distal
Rr606698	regulatory region 606698	within coordinates
Rr606699	regulatory region 606699	507 bp proximal
Rr606700	regulatory region 606700	975 bp proximal
Tssr40795	transcription start site region 40795	484 bp upstream
Tssr45020	transcription start site region 45020	1975 bp upstream
Tssr45021	transcription start site region 45021	1962 bp upstream