rs33894347 SNP Detail

Summary

• ID
  rs33894347
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80018228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCCAGAGAA AGCGCCGCCG
  GGGGTCTTCC TGCAGCTTGG ACACCATGCT GTTGAGGATG TGCTGGGTCT GTTCCGTGTA
  GTACTTGTCA AAAGTCTTGA TCCAGCCTGG GGGAGCCAAC ACAAGGTCCC CTCAATATGC
  CACATACTTC AGTCACACCC TCCTCATGCC TGCCATCTGA AAGCCCGCCC CACACCCTGC
  S
  GCAGCCGGGC CTACTGGCCC TTCACCTGGA TCGTTGTGGG AGTGAGGCAC CACAAACACT
  TGCAGGTCTT CAGTGTCCCA GTCATTTGGG CTGTAGGAGA TGTCAAAGCC TTGCCTCCAC
  ACGCCACCCT CCACATTGTC AAACGGCAAA TCCTCAGACA CGGTTAACAT CTGCCGGGGA
  GGAATGCAGC TCAGTGCCTG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J
ss46010554	mCV25426646	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss145143018	ENSMUSSNP3017339	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J
rs33894347					SNP	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80018228 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Man2a2	mannosidase 2, alpha 2			Intron
				Noncoding-Transcript-Variant
Tssr67437	transcription start site region 67437			1839 bp upstream
Tssr73220	transcription start site region 73220			367 bp downstream
Tssr73221	transcription start site region 73221			499 bp downstream