rs33892183 SNP Detail

Summary

• ID
  rs33892183
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156270723 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGCCTGCCC ACCTCCAGCA GCAGTGGCAG CGGCGGCGGC
  GGCGGCGGCA GGCAGTGAAG CTCTTCTCGT CTTCGCTGGG CTGGGGCAGT GAGTGAGGGG
  Y
  GAGGGAAGCC GAGGGGCGGG GGCGGTGAGC AGAGACAAAG GAGGATGTCT CTGGGGACTC
  TAGCGTCCAC AGGGAGTCGC AGTTGGTAGC AAAGAGCCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
ss45704880	mCV23473454	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss148128327	ENSMUSSNP3865554	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T			C
ss321445934	CHEV_4_155560375	CHEVERUD	SCREENING_POP	f	SNP					T		C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	MSM/Ms	SM/J
rs33892183					SNP	C	C	T	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156270723 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agrn	agrin			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi15501	CpG island 15501			within coordinates
Gm46878	predicted gene, 46878			within coordinates
Rr377477	regulatory region 377477			1921 bp upstream
Rr606687	regulatory region 606687			74 bp distal
Rr606688	regulatory region 606688			285 bp distal
Rr606689	regulatory region 606689			within coordinates
Rr606690	regulatory region 606690			63 bp proximal
Tssr40793	transcription start site region 40793			78 bp downstream
Tssr45009	transcription start site region 45009			175 bp upstream
Tssr45010	transcription start site region 45010			121 bp upstream
Tssr45011	transcription start site region 45011			within coordinates