rs33891546 SNP Detail

Summary

• ID
  rs33891546
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:9287179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAAGAGGGA CCAAAAAAAC CTCAGTAATT TACTCAAAGT AAATCATATT CCAATGAAAT
  GGCTTAGAAA CTCACACTCA AAATAAAAAT ACAGAGATAA TAAAATCAAC ATTTCTAAAG
  GCCAGACAGC ACGTCTGTTT TGTTCTGATT TGACTGAGCA TGGCTCTGCT CTGACAAGCT
  AGCTATCTTG GGGAAAGAGC CATCATTAAG TTGTGTCCTG TTATTTCAGT TTCAGTCCCA
  ACAACAACAA CAACAACAAC AACAACAACA ACAACACACA CACACACACA CACACACACA
  M
  ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACACAC ACACACTCCT
  CTTACTGCAG TCTCCCGACT TCCCATGTTC TGTTACGCTT TGGGACCTTT GATGACAATC
  CTGTTTGATA TACTGAAATT TCCCATGTAT TTATGGACTG AAAAATTGTG GGCTTGTTAT
  CACAGTCTTA TTGCTTCAAT GCTTTTGTCT CTTCCCACTT TCCCTCACAG CCACACTCAG
  CACAGTGGCT TGGGAATGGG TGCTTCTTCA CAAAATCCCC TGCCTCTTCT ACTCCTCGCC
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J
ss45597741	mCV23777417	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J
rs33891546					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9287179 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Clvs1	clavesin 1			Intron
				Noncoding-Transcript-Variant
Gm11816	predicted gene 11816			within coordinates
Rr588686	regulatory region 588686			141 bp proximal
Tssr40896	transcription start site region 40896			138 bp downstream