rs33891404 SNP Detail

Summary

• ID
  rs33891404
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156270351 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCA GGCTCATGGC AGGAGATAAG
  M
  AGAATTCTCT CCAAGTAGAA ATCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45570707	mCV23473442	ABI	CRAMUS_MOUSE	f	SNP	A	C	A	C
ss148128313	ENSMUSSNP816643	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	C		C
ss321445931	CHEV_4_155560003	CHEVERUD	SCREENING_POP	f	SNP					A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs33891404					SNP	A	C	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156270351 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agrn	agrin			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi15501	CpG island 15501			169 bp proximal
Gm46878	predicted gene, 46878			146 bp upstream
Rr606687	regulatory region 606687			within coordinates
Rr606688	regulatory region 606688			66 bp proximal
Rr606689	regulatory region 606689			299 bp proximal
Rr606690	regulatory region 606690			435 bp proximal
Tssr40793	transcription start site region 40793			285 bp upstream
Tssr45009	transcription start site region 45009			178 bp downstream
Tssr45010	transcription start site region 45010			199 bp downstream
Tssr45011	transcription start site region 45011			321 bp downstream