rs33891400 SNP Detail

Summary

• ID
  rs33891400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:156271117 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCAG CCAAGTGGGA GGGTCTGCAG
  R
  GACTGCTGTG TGGGCAGAGA CGTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	LG/J	SM/J
ss45570254	mCV23473726	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss148128337	ENSMUSSNP1326043	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321445936	CHEV_4_155560769	CHEVERUD	SCREENING_POP	f	SNP			A	A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	LG/J	SM/J
rs33891400					SNP	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156271117 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agrn	agrin			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi15501	CpG island 15501			301 bp distal
Gm46878	predicted gene, 46878			within coordinates
Rr377477	regulatory region 377477			1527 bp upstream
Rr606687	regulatory region 606687			468 bp distal
Rr606688	regulatory region 606688			679 bp distal
Rr606689	regulatory region 606689			within coordinates
Rr606690	regulatory region 606690			310 bp distal
Rr606691	regulatory region 606691			1789 bp proximal
Tssr40793	transcription start site region 40793			472 bp downstream
Tssr45009	transcription start site region 45009			569 bp upstream
Tssr45010	transcription start site region 45010			515 bp upstream
Tssr45011	transcription start site region 45011			381 bp upstream