rs33890991 SNP Detail

Summary

• ID
  rs33890991
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90417553 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCCTGACCC CCCCTAACCC CGCCCCTCCC AGTACTGGGA TTTAAGACCC ACACTGGACT
  CATCTACATC CTTTTATAGG GACTGCCTCT AGAAGATGTG GCTAGTTTTA GGGTGGGTCT
  TTTTACCTCA AGTAATCCAA TAAAGCAAAT CTGTATCCCC ACTTATGTAT CCCTAGTTCT
  TACATAATGT CTAGCAATGA TGAGGCATCA ATAAACACTG AATGAAGCTT GGGAAAAAGT
  TCTTCTAGTA GTTTTTTGGT TTTGTTTTTT TTTTTGTTGT TGTTGTTTTT TTTTTTTTTT
  K
  TTTTTCCGAG ACAGGGTTTC TCTGTGTAGC CTTGGATGTC CTGGAACTCA CTCTGTTGAC
  CAGGCTGGCC TTGAACTCAG AAATCTGCCT GCCTCTGCCT CCCGAGTGCT GGGATTAAAG
  GCGTGTGTCA CCACTGCCTC TGGTAGTTTT TTTGAGACAG AGTCTCTATA ATGTAGTTCT
  GGCTGTTCTA GAATTCTCTA TACAGACCAG GCTGGGCTTG GACTCACAGA GATCCTCCTG
  CCTTTTACGT CCCAGGTGCT GAGCTGGTGT TAACTATGGT ACGTGCCACC ATTTCTAGCT
                                                                   
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45480210	mCV23476220	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs33890991					SNP	T	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90417553 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	748 bp upstream
Cpgi13465	CpG island 13465	477 bp distal
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	1134 bp upstream
Rr397813	regulatory region 397813	569 bp downstream
Rr580381	regulatory region 580381	1140 bp distal
Rr580382	regulatory region 580382	1323 bp distal
Rr580383	regulatory region 580383	258 bp distal
S100a1	S100 calcium binding protein A1	788 bp downstream
Tssr30207	transcription start site region 30207	1141 bp downstream
Tssr30208	transcription start site region 30208	560 bp downstream
Tssr34237	transcription start site region 34237	1515 bp upstream
Tssr34238	transcription start site region 34238	740 bp upstream
Tssr34239	transcription start site region 34239	718 bp upstream
Tssr34240	transcription start site region 34240	887 bp downstream
Tssr34241	transcription start site region 34241	1774 bp downstream