rs33890720 SNP Detail

Summary

• ID
  rs33890720
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90417681 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGCCTTGGAT GTCCTGGAAC TCACTCTGTT GACCAGGCTG
  GCCTTGAACT CAGAAATCTG CCTGCCTCTG CCTCCCGAGT GCTGGGATTA AAGGCGTGTG
  Y
  CACCACTGCC TCTGGTAGTT TTTTTGAGAC AGAGTCTCTA TAATGTAGTT CTGGCTGTTC
  TAGAATTCTC TATACAGACC AGGCTGGGCT TGGACTCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45419305	mCV23476208	ABI	CRAMUS_MOUSE	f	SNP	T	T	T	C
ss135476761	ENSMUSSNP6928608	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T	C
ss320837925	CHEV_3_90314296	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33890720					SNP	T	T	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90417681 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	876 bp upstream
Cpgi13465	CpG island 13465	605 bp distal
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	1006 bp upstream
Rr397813	regulatory region 397813	697 bp downstream
Rr580381	regulatory region 580381	1268 bp distal
Rr580382	regulatory region 580382	1451 bp distal
Rr580383	regulatory region 580383	386 bp distal
S100a1	S100 calcium binding protein A1	660 bp downstream
Tssr30207	transcription start site region 30207	1269 bp downstream
Tssr30208	transcription start site region 30208	688 bp downstream
Tssr34237	transcription start site region 34237	1643 bp upstream
Tssr34238	transcription start site region 34238	868 bp upstream
Tssr34239	transcription start site region 34239	846 bp upstream
Tssr34240	transcription start site region 34240	759 bp downstream
Tssr34241	transcription start site region 34241	1646 bp downstream