rs33890698 SNP Detail

Summary

• ID
  rs33890698
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:90417676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTGTAGCCT TGGATGTCCT GGAACTCACT CTGTTGACCA
  GGCTGGCCTT GAACTCAGAA ATCTGCCTGC CTCTGCCTCC CGAGTGCTGG GATTAAAGGC
  R
  TGTGTCACCA CTGCCTCTGG TAGTTTTTTT GAGACAGAGT CTCTATAATG TAGTTCTGGC
  TGTTCTAGAA TTCTCTATAC AGACCAGGCT GGGCTTGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss45413878	mCV23476218	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	A
ss135476758	ENSMUSSNP6128084	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G	A
ss320837924	CHEV_3_90314291	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs33890698					SNP	G	G	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90417676 () rs orientation: forward

Symbol	Name	Function Class
Chtop	chromatin target of PRMT1	871 bp upstream
Cpgi13465	CpG island 13465	600 bp distal
Gm56783	predicted gene, 56783	within coordinates
Rr375350	regulatory region 375350	1011 bp upstream
Rr397813	regulatory region 397813	692 bp downstream
Rr580381	regulatory region 580381	1263 bp distal
Rr580382	regulatory region 580382	1446 bp distal
Rr580383	regulatory region 580383	381 bp distal
S100a1	S100 calcium binding protein A1	665 bp downstream
Tssr30207	transcription start site region 30207	1264 bp downstream
Tssr30208	transcription start site region 30208	683 bp downstream
Tssr34237	transcription start site region 34237	1638 bp upstream
Tssr34238	transcription start site region 34238	863 bp upstream
Tssr34239	transcription start site region 34239	841 bp upstream
Tssr34240	transcription start site region 34240	764 bp downstream
Tssr34241	transcription start site region 34241	1651 bp downstream